PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.242940.1
Common NameCsa_3G810530, LOC101205014
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 370aa    MW: 40917.7 Da    PI: 6.0554
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.242940.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.31.3e-08211258455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++iN ++  L+el+P +    +k    a +L + +++++sLq
  Cucsa.242940.1 211 SHSLAERARREKINARMKLLQELVPGC----NKISGTALVLDEIINHVQSLQ 258
                     8*************************9....888999999999999999998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.32E-15205276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.71E-8205262No hitNo description
Gene3DG3DSA:4.10.280.101.3E-14207275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.519207257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-6211258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-8213263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MEIKVGTVGG SSPIGRQSDD TGLESLQFCE EIQGLMTIPA ENASSFTALL ELPATQALEL  60
LHSPDSATAA VVNDDSVHHC IKDVPKPYFS AFNCNLTFPT NSGLIERVTK LSVLAKEHSP  120
ETTSSVPLNS SVNLEKVKNE PTTDTDSNPN PLQTLISDPT VENTNQRSAK RKEREKKGRG  180
STKKSKNESN EDAEKLPYVH VRARRGQATD SHSLAERARR EKINARMKLL QELVPGCNKI  240
SGTALVLDEI INHVQSLQRQ VEFLSMRLAA VNPRVDFNIE SILATENEPI LESNFPTMVS  300
PLMWPEIPVN GTRQQYQPQW HFDGSVNHQG WARDEHNHHN FSPPENSLLS YDSSANSASL  360
HSNQLKMEL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004136583.10.0PREDICTED: transcription factor bHLH48
SwissprotQ3EAI19e-97BH060_ARATH; Transcription factor bHLH60
TrEMBLA0A0A0LEI60.0A0A0A0LEI6_CUCSA; Uncharacterized protein
STRINGVIT_08s0007g07870.t011e-143(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49852945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.21e-104bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]